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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3466914_3468942_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3466914 - 3468942
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CATTTATTAATT
Flanking Amino Acid:
MPKGGRKGGHKGRA
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.5
0.84
0.8
83.7
31.3
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
64.8
0.54
1.6
77.76
38.8

Associated Gene:

Gene:
PDAP1
Ensembl Gene ID:
ENSAPLG00000006542
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006801
3466901 - 3473230
6330