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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3469035_3470874_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3469035 - 3470874
Intron Length:
1840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
GTGATTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTGACA
Flanking Amino Acid:
QLQAEKQKAREEEEQEEGGE
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
70.4
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.9
0.49
0.9
66.3
40.6
Minor 5ss
33.5
-1.9
3.5
41.3
45.2
Minor BPS
66.5
0.51
1.6
77.53
32.1

Associated Gene:

Gene:
PDAP1
Ensembl Gene ID:
ENSAPLG00000006542
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006801
3466901 - 3473230
6330