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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3470983_3471368_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3470983 - 3471368
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTTA
5'SS Class:
major
3'SS Sequence:
TCTTAAACCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAAAC
Flanking Amino Acid:
ESDEDDEDYQQKRKGVEGLI
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
68.5
38.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.1
0.38
0.9
64.1
36.6
Minor 5ss
39
-1.2
3.6
55.3
48.9
Minor BPS
74.8
0.76
1.3
79.08
36.2

Associated Gene:

Gene:
PDAP1
Ensembl Gene ID:
ENSAPLG00000006542
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006801
3466901 - 3473230
6330