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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3476285_3476584_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3476285 - 3476584
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
CTCTCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCCTTTTTACT
Flanking Amino Acid:
LCLADANKKMAVASLCTETL
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.4
54.5
49.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.1
0.63
0.7
72.5
25.6
Minor 5ss
39.7
-1.2
2.8
44.3
43.6
Minor BPS
53.2
0.18
1.6
68.31
42.9

Associated Gene:

Gene:
ARPC1B
Ensembl Gene ID:
ENSAPLG00000020035
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019341
3470822 - 3479456
8635