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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3478762_3479392_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3478762 - 3479392
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTCCCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGTT
U12 Branch Point Sequence:
TTTCCCCTCCCC
Flanking Amino Acid:
SCHAWNKDRTQIALCPNNHE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
70.1
40.6
Major BPS
30.2
-1.2
4.2
51.1
46.3
Major PPT
73.4
0.53
0.8
64.8
30.7
Minor 5ss
38.9
-1.3
2.7
51.9
37.5
Minor BPS
39.1
-0.8
3.7
68.8
42.6

Associated Gene:

Gene:
ARPC1B
Ensembl Gene ID:
ENSAPLG00000020035
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019341
3470822 - 3479456
8635