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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3486079_3486949_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3486079 - 3486949
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTGATTTAAAA
Flanking Amino Acid:
DGAMTIWDFKTLESSIQGLR
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76.5
0.6
1
75
33.7
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
54.3
0.13
1.7
66.33
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011059
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011565
3486040 - 3498094
12055