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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3488219_3489369_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3488219 - 3489369
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTTCACTGAAGT
Flanking Amino Acid:
VSVADASKNMMVSQLKTEFL
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
81.4
0.71
0.9
80.2
37.3
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
55.4
0.25
2
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011059
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011565
3486040 - 3498094
12055