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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3493097_3494652_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3493097 - 3494652
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TCTTTTAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
SVCYFESENDWWVSKHIKKP
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
61.9
39.6
Major BPS
100
1.24
0.5
100
0
Major PPT
71
0.47
1
72.3
36.8
Minor 5ss
38.9
-1.2
3
46.9
44
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011059
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011565
3486040 - 3498094
12055