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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3494876_3497385_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3494876 - 3497385
Intron Length:
2510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AGATTATTAACG
Flanking Amino Acid:
ELKEHNGHITGIDWAPKSDR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
70.8
0.47
1
62.9
42.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
57.8
0.11
1.7
60.73
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011059
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011565
3486040 - 3498094
12055