Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3497491_3498012_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3497491 - 3498012

Intron Length:

522

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTTCTTCTTCAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTGGAT

U12 Branch Point Sequence:

TTCTTCTTCAAG

Flanking Amino Acid:

TCHAWNRDRTQIAISPNNHE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.3

77.1

37.8

Major BPS

62.6

0.31

1.4

63.1

44.4

Major PPT

80.4

0.68

79.5

32.9

Minor 5ss

39.9

-1.1

2.8

53.6

37.3

Minor BPS

53.5

-0

63.72

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011565

3486040 - 3498094

12055