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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3556856_3582036_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3556856 - 3582036
Intron Length:
25181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATCT
Flanking Amino Acid:
NGSSIKIRLTVLCAKNLAKK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
75.8
0.89
1.5
90.23
33.7

Associated Gene:

Gene:
SMURF1
Ensembl Gene ID:
ENSAPLG00000010476
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010945
3556801 - 3598846
42046