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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3586202_3588490_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3586202 - 3588490
Intron Length:
2289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AGTGCTTTAACT
Flanking Amino Acid:
VSTWHDPRIPRDLNSVNCDE
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
81.9
0.72
0.6
81.4
23.7
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
73.7
0.82
1.3
82.97
38.2

Associated Gene:

Gene:
SMURF1
Ensembl Gene ID:
ENSAPLG00000010476
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021584
3581814 - 3598846
17033
ENSAPLT00000010945
3556801 - 3598846
42046