Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3588638_3590010_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3588638 - 3590010

Intron Length:

1373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGAACC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTCAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTTTCTTTCAAA

Flanking Amino Acid:

FTDPRLHHIMNHQCQLKEPS

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

75.3

32.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

79.7

0.67

0.9

27.2

Minor 5ss

36.5

-1.5

2.9

45.8

35.7

Minor BPS

65.4

0.48

1.8

80.33

35.6

Associated Gene:

Gene:

SMURF1

Ensembl Gene ID:

ENSAPLG00000010476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021584

3581814 - 3598846

17033

ENSAPLT00000010945

3556801 - 3598846

42046