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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3591006_3592644_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3591006 - 3592644
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
EEGLDYGGVAREWLYLLCHE
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
SMURF1
Ensembl Gene ID:
ENSAPLG00000010476
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021584
3581814 - 3598846
17033
ENSAPLT00000010945
3556801 - 3598846
42046