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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3604910_3615747_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3604910 - 3615747
Intron Length:
10838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
TTTGCCTTACTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
63.7
0.29
1.8
70.75
43.1

Associated Gene:

Gene:
RNF216
Ensembl Gene ID:
ENSAPLG00000010364
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020494
3604384 - 3667098
62715