Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_36123_36451_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36123 - 36451

Intron Length:

329

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTAGA

5'SS Class:

strong_major

3'SS Sequence:

TAATGATTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTGTAATG

Flanking Amino Acid:

QYKEYSVSWEFALNKTPPSS

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

1.1

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.8

0.54

66.5

43.7

Minor 5ss

40.6

-1

2.6

51.9

44.6

Minor BPS

58.2

0.12

69.97

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015598

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026654

32314 - 39270

6957

ENSAPLT00000016249

32314 - 48524

16211

ENSAPLT00000031837

32314 - 47331

15018