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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3626249_3627262_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3626249 - 3627262
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
CACTCTGTAAAT
Flanking Amino Acid:
YEQKVKEMAEHADFLLALQM
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
84.5
0.78
0.8
76.4
37.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.6
-0
2.1
65.66
45.1

Associated Gene:

Gene:
RNF216
Ensembl Gene ID:
ENSAPLG00000010364
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020494
3604384 - 3667098
62715