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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3627314_3628365_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3627314 - 3628365
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTATGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTGTAGCT
Flanking Amino Acid:
LQMNEEQYQKDGQMIECRCC
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
1
69.7
41.4
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
50.3
0.09
2.3
79.24
43.5

Associated Gene:

Gene:
RNF216
Ensembl Gene ID:
ENSAPLG00000010364
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020494
3604384 - 3667098
62715