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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3691821_3692368_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3691821 - 3692368
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGACTCAACC
Flanking Amino Acid:
PKANREKMTQIMFETFNTPA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.9
0.52
0.7
65.7
30.3
Minor 5ss
35.7
-1.6
2.6
42.3
44.5
Minor BPS
60.9
0.32
1.9
75.87
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010147
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010581
3691423 - 3694380
2958