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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3692808_3693115_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3692808 - 3693115
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCTTGCTGACTT
Flanking Amino Acid:
PEALFQPSFLGMESCGIHET
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
81
0.7
0.7
75.6
26.6
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
46
-0.2
2.1
63.83
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010147
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010581
3691423 - 3694380
2958