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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3693298_3693633_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3693298 - 3693633
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
TTCTCTCCCACA
Flanking Amino Acid:
ALAPSTMKIKIIAPPERKYS
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
81.5
0.71
0.7
76.3
25.9
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
45.6
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010147
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010581
3691423 - 3694380
2958