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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3699971_3700245_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3699971 - 3700245
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
MKELVSGESEEE
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
FBXL18
Ensembl Gene ID:
ENSAPLG00000010121
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043608
3699820 - 3716523
16704