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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3700447_3701330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3700447 - 3701330
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
TGTTTGAGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCATTGAATC
Flanking Amino Acid:
HTVLLQKDYKVNKDKVKQLM
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
67.6
0.4
1.1
61.6
43.4
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
50
-0
1.6
61.52
37.9

Associated Gene:

Gene:
FBXL18
Ensembl Gene ID:
ENSAPLG00000010121
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035649
3699820 - 3716694
16875
ENSAPLT00000010544
3699101 - 3716694
17594
ENSAPLT00000043608
3699820 - 3716523
16704
ENSAPLT00000036866
3699101 - 3705635
6535