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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3702872_3705187_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3702872 - 3705187
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGCCCCCTGACT
Flanking Amino Acid:
LKHCKCLRDLRLEQPYFSAG
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
82.1
0.72
0.7
77.4
24.5
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
58.1
0.34
1.7
74.82
41.5

Associated Gene:

Gene:
FBXL18
Ensembl Gene ID:
ENSAPLG00000010121
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043608
3699820 - 3716523
16704
ENSAPLT00000036866
3699101 - 3705635
6535
ENSAPLT00000035649
3699820 - 3716694
16875
ENSAPLT00000010544
3699101 - 3716694
17594