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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3705407_3705622_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3705407 - 3705622
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCGTTCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GAATTCTTGATT
Flanking Amino Acid:
CRNLQQSIVRSSIS*
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.9
0.58
0.9
69.4
36.8
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
65.9
0.58
1.2
72.88
37.9

Associated Gene:

Gene:
FBXL18
Ensembl Gene ID:
ENSAPLG00000010121
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036866
3699101 - 3705635
6535