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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3755706_3756624_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3755706 - 3756624
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTCCT
5'SS Class:
major
3'SS Sequence:
GCTCTGCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CCGTGCTGAGTT
Flanking Amino Acid:
MELQRSAQLVERLKASEQRA
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
68.2
42.6
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
71.7
0.49
0.9
64.8
36.4
Minor 5ss
35.9
-1.6
3.2
48.1
42.7
Minor BPS
43.5
-0.4
2
55.95
46.8

Associated Gene:

Gene:
TNRC18
Ensembl Gene ID:
ENSAPLG00000028315
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046974
3744700 - 3783224
38525