Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3762527_3763561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3762527 - 3763561

Intron Length:

1035

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCACCTCGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

TCTGTGTTAACT

Flanking Amino Acid:

HDVAPSFSNELKLKKKKVPS

Intron Amino Acid Position:

1526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

1.2

76.7

33.6

Major BPS

77.7

0.69

30.2

Major PPT

69.5

0.44

64.9

36.3

Minor 5ss

29.4

-2.4

2.9

36.5

40.5

Minor BPS

58.2

0.33

2.2

78.66

44.1

Associated Gene:

Gene:

TNRC18

Ensembl Gene ID:

ENSAPLG00000028315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046974

3744700 - 3783224

38525