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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3777502_3777934_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3777502 - 3777934
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CACTGCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TAATCCCTACCT
Flanking Amino Acid:
SMLVERPPTPAPRSCIIDKD
Intron Amino Acid Position:
2056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
68.6
0.42
0.9
61.2
34.7
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
58.7
0.35
2
79.22
42.2

Associated Gene:

Gene:
TNRC18
Ensembl Gene ID:
ENSAPLG00000028315
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046974
3744700 - 3783224
38525