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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3779872_3780149_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3779872 - 3780149
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TGACCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATCTCTTTGACC
Flanking Amino Acid:
RLLPPDYKIQCAEPSPALLV
Intron Amino Acid Position:
2196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
61.7
44.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.1
0.48
1
61.5
44.3
Minor 5ss
34.4
-1.8
3.1
42.1
44.4
Minor BPS
73.7
0.73
1.1
75.62
35

Associated Gene:

Gene:
TNRC18
Ensembl Gene ID:
ENSAPLG00000028315
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046974
3744700 - 3783224
38525