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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3781952_3782403_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3781952 - 3782403
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
CTCTTGGGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TCTTCTTTTCCT
Flanking Amino Acid:
NPGKKLNEGKRWDQKSGRSL
Intron Amino Acid Position:
2473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
65.3
0.34
1
59.4
40.7
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
45.6
-0.2
3.6
79.44
43

Associated Gene:

Gene:
TNRC18
Ensembl Gene ID:
ENSAPLG00000028315
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046974
3744700 - 3783224
38525