Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3804463_3805289_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3804463 - 3805289

Intron Length:

827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

GGTTGTTGAACT

Flanking Amino Acid:

TYVPSSPTRHAYTEDLGAVG

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.4

40.1

Major BPS

77.9

0.69

0.8

75.9

Major PPT

83.1

0.74

0.7

77.2

24.8

Minor 5ss

31.8

-2.1

3.1

36.7

42.5

Minor BPS

55.3

0.24

1.9

74.46

42.1

Associated Gene:

Gene:

WIPI2

Ensembl Gene ID:

ENSAPLG00000009715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010147

3804350 - 3822649

18300