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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3807935_3808731_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3807935 - 3808731
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTAACCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTTCTAACC
Flanking Amino Acid:
HIFKLETVKEKPQEEPTTWT
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76
34.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.4
0.53
0.8
67.3
33.9
Minor 5ss
45.1
-0.5
3.1
60.9
38.3
Minor BPS
62.6
0.37
1.6
76.1
33.6

Associated Gene:

Gene:
WIPI2
Ensembl Gene ID:
ENSAPLG00000009715
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010147
3804350 - 3822649
18300