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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3808840_3809762_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3808840 - 3809762
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTTTTCCACC
Flanking Amino Acid:
KLFEFRRGVKRCVSICSLAF
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
73.2
0.52
0.8
66.7
34.6
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
49.2
-0
1.9
65.33
41

Associated Gene:

Gene:
WIPI2
Ensembl Gene ID:
ENSAPLG00000009715
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010147
3804350 - 3822649
18300