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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3810700_3811176_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3810700 - 3811176
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTATTTTATC
Flanking Amino Acid:
EVQVFDTINLRAANMIPAHD
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.6
0.76
0.8
77.8
31
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
53
0.08
1.8
66.9
39.2

Associated Gene:

Gene:
WIPI2
Ensembl Gene ID:
ENSAPLG00000009715
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010147
3804350 - 3822649
18300