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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3811275_3811892_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3811275 - 3811892
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
AAATTCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATATTCTAAATT
Flanking Amino Acid:
TIRETPPNPAGLCALSINND
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.4
0.37
0.9
56.6
40
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
64.6
0.54
1.6
78.58
38

Associated Gene:

Gene:
WIPI2
Ensembl Gene ID:
ENSAPLG00000009715
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010147
3804350 - 3822649
18300