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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3813430_3817613_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3813430 - 3817613
Intron Length:
4184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TGTGATTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CTTCCTGTGATT
Flanking Amino Acid:
THLLYQIYECTDTEDVCIVE
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
71.4
0.48
1
62.1
44.1
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
49.5
0.04
2
71.69
40.2

Associated Gene:

Gene:
WIPI2
Ensembl Gene ID:
ENSAPLG00000009715
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010147
3804350 - 3822649
18300