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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3859325_3860028_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3859325 - 3860028
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTCCT
5'SS Class:
major
3'SS Sequence:
CTCTGCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ACCACACTGACG
Flanking Amino Acid:
TLLFNQLLDKGSSLGCFHWS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
66.3
45.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
75
0.56
0.8
68.7
31.7
Minor 5ss
31.8
-2.1
2.8
35.5
40.2
Minor BPS
42.2
-0.7
1.9
43.65
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026450
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030746
3857754 - 3864129
6376