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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3888299_3890048_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3888299 - 3890048
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTTTT
5'SS Class:
major
3'SS Sequence:
TCTCTCCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTCTCTCCAAGC
Flanking Amino Acid:
AVLDLAGDHRGMDEKPTIAF
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
78.8
38.3
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
70.9
0.47
0.9
67.2
32.8
Minor 5ss
51.1
0.04
2.9
75.5
40.6
Minor BPS
46.8
-0.2
2.1
62.86
42.9

Associated Gene:

Gene:
FOXK1
Ensembl Gene ID:
ENSAPLG00000009084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009458
3885547 - 3931177
45631