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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3890331_3891039_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3890331 - 3891039
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTCCTATTAACG
Flanking Amino Acid:
PEYRYSQSAPGSPVSAQPVI
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.3
0.8
0.8
84.4
30.5
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
52.6
-0
1.7
57.31
44.2

Associated Gene:

Gene:
FOXK1
Ensembl Gene ID:
ENSAPLG00000009084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009458
3885547 - 3931177
45631