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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3891207_3892358_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3891207 - 3892358
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
ACATCTACACCC
Flanking Amino Acid:
FRTPFGPLSSRSAPASPTHP
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
76.4
0.59
1
72.6
42.4
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
42.5
-0.5
1.9
50.62
40

Associated Gene:

Gene:
FOXK1
Ensembl Gene ID:
ENSAPLG00000009084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009458
3885547 - 3931177
45631