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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3894466_3895661_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3894466 - 3895661
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCAGAGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AGTAACTAAACT
Flanking Amino Acid:
ADASGGDSPKDESKPPYSYA
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.2
55.2
43.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
26.3
-2.7
3.1
32.2
41.9
Minor BPS
53.7
0.19
1.9
73.4
42.7

Associated Gene:

Gene:
FOXK1
Ensembl Gene ID:
ENSAPLG00000009084
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009458
3885547 - 3931177
45631