Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3906268_3930695_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3906268 - 3930695

Intron Length:

24428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CTTTCCCGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCATCAT

U12 Branch Point Sequence:

TTTCCCGTACAG

Flanking Amino Acid:

RGGPALLLPPQCTFRFPSTV

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

57.2

42.1

Major BPS

57.9

0.2

1.4

44.2

Major PPT

78.4

0.64

0.9

72.6

32.3

Minor 5ss

28.8

-2.4

3.1

36.7

41.6

Minor BPS

46.5

-0.4

2.4

62.06

45.4

Associated Gene:

Gene:

FOXK1

Ensembl Gene ID:

ENSAPLG00000009084

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009458

3885547 - 3931177

45631