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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3957722_3958142_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3957722 - 3958142
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCATGTTTAAAT
Flanking Amino Acid:
FFGTCLEYRKGFLDFDNQCF
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.8
0.69
0.8
76.1
32.5
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
57.4
0.31
1.9
73.64
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007867
3955027 - 3966425
11399