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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3958196_3959277_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3958196 - 3959277
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATCTATC
Flanking Amino Acid:
QCFQKYGKVWGIYDGRQPVV
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.4
0.44
0.9
62.2
34.7
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
47.7
-0.1
2.1
65.17
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007867
3955027 - 3966425
11399