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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3960006_3960276_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3960006 - 3960276
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAC
U12 Branch Point Sequence:
TGTACTTTAGTG
Flanking Amino Acid:
PTFTSGKLKEMFPIMKHYGE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
63.6
0.34
1.2
55.1
42.1
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
55.1
0.02
1.7
60.78
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007867
3955027 - 3966425
11399