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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3962662_3963366_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3962662 - 3963366
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TGTCACCAAAGA
Flanking Amino Acid:
KQDREKETQKGRVDFLQMMI
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
40.8
-0.7
2.2
55.55
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007867
3955027 - 3966425
11399