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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3965525_3966073_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3965525 - 3966073
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCACCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CTAACTTCAAGT
Flanking Amino Acid:
FTFQICKETQVPLKLSSHGL
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
73.1
0.52
0.9
65.8
34.4
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
48.5
-0
1.9
65.55
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007867
3955027 - 3966425
11399