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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3983079_3984544_F

Intron Information:

Intron Rank:
130196
Intron Class:
major
Intron Phase:
Intron Coordinates:
3983079 - 3984544
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTGGCATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
75
0.56
0.9
69
37.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
56.3
0.18
1.7
64.12
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020032
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026984
3982996 - 3989336
6341