Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3989130_3989253_F

Intron Information:

Intron Rank:

130198

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3989130 - 3989253

Intron Length:

124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGCTCC

5'SS Class:

weak_major

3'SS Sequence:

TCATCACTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTTCCCCTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.2

60.1

39.9

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

67.9

0.4

59.9

40.4

Minor 5ss

-0.2

2.8

70.3

39.8

Minor BPS

69.6

0.59

1.6

80.96

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020032

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046463

3985098 - 3989336

4239

ENSAPLT00000026984

3982996 - 3989336

6341