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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3994821_3996293_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3994821 - 3996293
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTCTGTAATC
Flanking Amino Acid:
WPEPEEFRPERFSKENKESI
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
74.7
0.56
1
74.7
39
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
67.7
0.53
2
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006077
3991321 - 4004086
12766